List arrays by species - chicken
Chicken 20K Oligo
The chicken array is prepared from 20,460 oligonucleotides designed against
the chicken ENSEMBL transcripts. The Oligonucleotides were designed using the
OligoArray 2.0 software against a unique set of chicken transcripts. The transcripts
were selected from the chicken genome in Dec 2004 and extensive matching of
the UMIST and DT40 full length EST's with the TGR clusters. The resulting 24,984
sequences yielded 20,460 oligonucleotides corresponding to 24182 different
genes/transcripts. The array is available printed either in singlets or doublets.
Chicken 13K cDNA
The chicken 13K is a cDNA array created from the chicken EST collections generated
by BBSRC, University of Delaware and the Fred Hutchinson Cancer Research Center.
From a total of 363,838 chicken ESTs representing
24 different adult or embryonic tissues, a set of 11,447 non-redundant ESTs were
selected and added to an existing collection of clones (4,162) from immune
tissues and a chicken bursal cell line (DT40).
Quality control analysis indicates there are 13,007 useable features on the
array, including 160 control spots. The array provides broad coverage of mRNAs
expressed in many tissues; in addition, clones with expression unique to various
tissues can be detected.
Ref: Development of a cDNA array for chicken gene expression analysis. Burnside
J, Neiman P, Tang J, Basom R, Talbot R, Aronszajn M, Burt D, Delrow J.
BMC Genomics. 2005 Feb 4;6(1):13.
Chicken 5K Immune cDNA
Name: ARK-Genomics G. gallus Immune Array 5K v3.1
ArrayExpress ID:
A-MEXP-307
Description:
The chicken 5K Immune array is constructed from 2 new immune-related cDNA libraries
and contains 5190 elements (in duplicate). Clones on the array originate from
tissues known to contain high levels of cells related to the immune system,
namely Bursa, Peyers patch, thymus and spleen. Represented on the array are
genes that are known to cluster with existing chicken ESTs as
well as genes that are unique to our libraries. Some of these genes have no
known homologies and represent novel genes in the chicken collection. A series
of reference genes (ie. genes of known immune function) are also present on
the array. Functional annotation data is also provided for as many of the genes
on the array as is possible.
Ref: Development of a chicken 5 K microarray targeted towards immune function.
Smith J, Speed D, Hocking PM, Talbot RT, Degen WG, Schijns VE, Glass EJ, Burt
DW. BMC Genomics. 2006 Mar 13;7:49.
Chicken
5k Bioceramic cDNA
The Chicken Bioceramic is a cDNA array constructed from bane and shell gland
subtractive cDNA libraries. The main libraries were prepared using the Clontect
subtractive hybridisation kit. The bone libraries were a subtraction of liver
from bone. The shell and library was a subtraction of shell gland form liver
tissue. The array consists of 5,060 randomly selected clones from these libraries
and an additional 1,927 selected EST's from the BBSRC Chicken EST chondrocyte
library.
Chicken 5k Neuroendocrine cDNA
cDNA inserts 5,000 in duplicate Neuorendocrine array - clones from SHH library
and targeted candidate genes.